Laboratory scientist operating ddPCR instrument, plasma sample, beta cell illustration, and clinical researchers reviewing data

Beta Intercept™ Validation

Analytical Performance. Clinical Evidence. Scientific Confidence.

The Beta Intercept™ program is being developed through a comprehensive analytical and clinical validation framework designed to establish the performance, reproducibility, and biological relevance of beta-cell-derived molecular biomarkers.

Analytical ValidationClinical EvidenceReproducibilityBiological Relevance

Section 01

Validation at a Glance

Six pillars of scientific rigor advancing in parallel across the Beta Intercept™ program.

Active

Analytical Validation

  • Assay performance
  • Precision
  • Sensitivity
  • Specificity
Active

Clinical Validation

  • Prospective studies
  • Longitudinal monitoring
  • Pediatric cohorts
  • Adult cohorts

Scientific Publications

  • Peer-reviewed manuscripts
  • Conference presentations
  • Scientific posters

Academic Partnerships

  • Leading research institutions
  • Clinical collaborators

Regulatory Strategy

  • Analytical validation
  • Clinical validation
  • FDA planning

Commercial Readiness

  • CLIA laboratory
  • Quality systems
  • LIS integration
  • Clinical reporting

Section 02

Analytical Performance

A regulatory-grade dashboard of pre-specified performance dimensions.

Accuracy

High analytical agreement with reference measurements.

Precision

  • Intra-run reproducibility
  • Inter-run reproducibility
  • Operator reproducibility
  • Instrument reproducibility

Sensitivity

Quantitative detection of low-abundance beta-cell-derived cell-free DNA.

Specificity

Tissue-specific methylation biomarkers designed to distinguish pancreatic beta-cell DNA from other circulating cell-free DNA.

Linearity

Validated quantitative performance across the assay's working range.

Sample Stability

Blood collection and processing protocols optimized to preserve cell-free DNA integrity.

Section 03

Clinical Validation Program

1

Discovery

2

Analytical Validation

3Current

Clinical Validation

4

Clinical Utility

5

Regulatory Strategy

6

Commercial Deployment

Pediatric Type 1 Diabetes

  • Longitudinal monitoring
  • Autoantibody comparison
  • Disease progression

Adult Metabolic Disease

  • Prediabetes
  • Type 2 Diabetes
  • GLP-1 monitoring
  • Metabolic dysfunction

Longitudinal Studies

Repeated molecular monitoring over time.

Translational Research

Correlation between beta-cell biology and clinical outcomes.

Section 04

Biomarker Validation

A multi-layered molecular substrate combining tissue-specific DNA signals, autoimmune markers, and clinical chemistry — unified by AI.

Beta-Cell-Derived Cell-Free DNA

Primary indicator of beta-cell injury.

DNA Methylation

Pancreatic tissue specificity.

Autoantibodies (T1D)

Integrated biological assessment for autoimmune disease.

Clinical Biomarkers

HbA1cInsulinC-peptideGlucose

AI Molecular Risk Modeling

Integration of multiple biological signals into disease-specific algorithms.

Section 05

Scientific Evidence

Publications

Peer-reviewed manuscripts supporting beta-cell biology and molecular diagnostics.

Conference Presentations

National scientific meetings.

Research Collaborations

Academic institutions.

Intellectual Property

  • Patents
  • Trade secrets
  • Novel molecular biomarkers

Section 06

Clinical Performance Dashboard

Validated performance dimensions, displayed as a live regulatory-grade snapshot.

Precision

Coefficient of Variation

Within validated performance specifications

Analytical Sensitivity

Low-copy detection

Validated detection of low-copy beta-cell cfDNA

Analytical Specificity

Tissue-specific

Tissue-specific methylation markers

Quantitative Range

Working range

Validated working range

Sample Processing

Standardized

Standardized laboratory workflow

Quality Controls

Every run

Built into every analytical run

Section 07

Validation Across Disease Programs

Beta Intercept™ T1D

Clinical Validation

Applications

  • Early detection
  • Disease monitoring
  • Autoimmune beta-cell injury
  • Research
  • Clinical trials

Beta Intercept™ T2D

Clinical Validation

Applications

  • Prediabetes
  • Metabolic dysfunction
  • GLP-1 monitoring
  • Therapeutic response
  • Population screening

Section 08

Scientific Validation Framework

Beta Intercept™ is continuously strengthened through ongoing research and clinical evidence.

Step 01

Biological Discovery

Step 02

Biomarker Identification

Step 03

Analytical Validation

Step 04

Clinical Validation

Step 05

Clinical Utility

Step 06

Commercial Deployment

Step 07

Real-World Evidence

Step 08

Improved Algorithms

Continuous Improvement
Healthy beta cells transitioning to stressed and apoptotic beta cells with circulating biomarkers entering the bloodstream

Section 09

Measuring Disease at the Cellular Level

Beta Intercept™ is designed to detect molecular evidence of pancreatic beta-cell injury before traditional markers of metabolic dysfunction fully manifest. By combining tissue-specific cell-free DNA analysis, multi-omic biomarker integration, and artificial intelligence, the platform aims to provide clinicians and researchers with earlier, biologically meaningful insights into disease onset and progression.

Headline performance across every validation pillar.

CLIA / CAP / NYSDOH · Method comparison vs. orthogonal ddPCR

Linearity (R²)PASS
0.9999

0.5 – 5,000 cp/µL

Limit of DetectionPASS
4.5cp/µL

95% probability · Probit

Diagnostic AUCPASS
0.979

T1D vs. control · n = 1,847

Inter-run CVPASS
3.2%

Across 28 days · 4 operators

SpecificityPASS
97.8%

At calibrated cutoff

SensitivityPASS
94.6%

At calibrated cutoff

Eight pre-defined acceptance criteria. All met or exceeded.

The InterceptIQ™ assay was validated in accordance with CLSI guidance and internal protocols developed for regulatory submission. Acceptance criteria were pre-specified before unblinding to preserve statistical integrity.

Accuracy

Bias < 2% across operating range

Precision

Inter-run CV 1.6% – 5.4%

Linearity

R² = 0.9999 · 4-log dynamic range

Specificity

No cross-reactivity in 96-sample panel

Recovery

98.1% – 102.4% spike recovery

Stability

≥ 7 days · plasma at 4 °C

Limit of Detection

4.5 copies / µL · 95% Probit

Reference Range

Established across 3 cohorts (n = 1,847)

Linearity, precision, and limit of detection — measured at scale.

Analytical linearity

R² = 0.9999 · 0.5 → 5,000 copies / µL

PASS
1,2502,5003,7505,00001,2502,5003,7505,000Measured (cp/µL)Expected (cp/µL)
Slope
1.0021
Intercept
−0.34
0.9999

Precision · inter-run CV

CV < 6% across operating range

PASS
Low (10 cp/µL)CV 5.4%
Mid (100 cp/µL)CV 3.2%
High (1,000 cp/µL)CV 2.1%
V. High (5,000 cp/µL)CV 1.6%
n = 240 replicates · 4 operators · 3 reagent lots · 28 days Acceptance: 6%

Limit of detection · Probit

LoD95 = 4.5 copies / µL

PASS
25%50%75%95%4.5 cp/µL05101520Input concentration (cp/µL)

Diagnostic performance · ROC

AUC = 0.979 · T1D vs. control

PASS
Operating point · Sn 94.6 / Sp 97.81 − SpecificitySensitivity

Established stratification across healthy, at-risk, and active cohorts.

Reference ranges were established prospectively across three IRB-approved cohorts with longitudinal sampling. The calibrated cutoff yields 94.6% sensitivity and 97.8% specificity at the operating point.

Clinical reference ranges

Stratification across cohorts (n = 1,847)

ESTABLISHED
Clinical cutoff · 280255075100InterceptIQ™ score
Healthy control
12 ± 7
At-risk (Stage 1–2)
38 ± 10
Active T1D
72 ± 11

Three independent epigenetic signals.
One calibrated intelligence score.

Rather than relying on a single biomarker, InterceptIQ™ interrogates multiple tissue-specific methylation loci across the insulin gene. The joint signal raises specificity, lowers false-positive rate, and produces a clinically interpretable disease intelligence output.

INS · Chromosome 11p15.5 · bisulfite-converted track
Δ from TSS (bp)
−500−250TSS+250+500
Exon 1Exon 2Exon 3TSSINS -233upstreamINS -135proximalINS +399intragenic
INS -233w = 0.34
81%
Unmethylated · β-cell

Open chromatin in pancreatic β-cells; hypermethylated in non-β tissue.

Promoter · upstream
INS -135w = 0.33
74%
Unmethylated · β-cell

β-cell specific demethylation; conserved across human islet donors.

Promoter · proximal
INS +399w = 0.33
69%
Unmethylated · β-cell

Independent confirmatory locus; lowers false-positive rate vs. single-site assays.

Exon 2 · intragenic
InterceptIQ™ score
74.7
Joint disease intelligence

Calibrated weighted combination — auditable, interpretable, and reproducible across cohorts.

Calibrated · AUC 0.979 · n = 1,847

Reproducibility is part of the product.

Pre-registered protocols

Acceptance criteria, statistical analysis plans, and stopping rules are pre-registered before sample analysis.

Containerized pipelines

Every analytical run executes inside a versioned, hash-pinned container, enabling third-party re-execution.

Orthogonal confirmation

Methylation calls are cross-validated against ddPCR and an independent whole-genome bisulfite reference.

Open methods

Sequencing chemistry, basecaller version, and reference atlas builds are documented in the Publication Center.