Kihealth Labs scientist examining a sample under a microscope beside molecular analytics displays

Kihealth Labs · Scientific Foundation

The molecular biology of disease interception.

Kihealth combines tissue-specific molecular diagnostics, high-complexity laboratory science and longitudinal analytics to study the biological processes underlying type 1 diabetes, prediabetes and type 2 diabetes.

Pancreatic β-Cell BiologyCell-Free DNATissue-Specific MethylationDigital Droplet PCRLiquid Biopsy

The Biological Problem

Diabetes Develops Before Conventional Measures Tell the Whole Story

Diabetes develops through a biological continuum. Changes in autoimmunity, beta-cell stress, insulin-producing capacity and glycemic regulation can emerge at different times and progress at different rates.

Established biomarkers provide essential information about this process — but each measures a different part of the disease. None directly quantifies active beta-cell injury or death.

Scientific illustration of a pancreatic beta cell releasing cfDNA fragments labeled INS −233, −135 and +399 into the bloodstream
Current Standard of Detection

A1c

Glycemic exposure over time

A1c reflects average blood-glucose exposure over approximately the preceding two to three months, with greater influence from more recent glucose levels.

Glucose

Current or recent glycemic status

A traditional blood-glucose measurement provides a snapshot of circulating glucose at a particular point in time. Repeated measurements or continuous glucose monitoring can provide a broader picture of glycemic patterns.

C-Peptide

Endogenous insulin secretion

C-peptide is released when the body produces insulin and is used to assess endogenous insulin secretion and residual beta-cell function.

Islet Autoantibodies

Evidence of islet autoimmunity

Islet autoantibodies identify an immune response directed toward pancreatic islet targets and support T1D risk assessment, classification and staging.

What Each Signal Reveals

Current

A1c
Shows glycemic exposure over time.

Current

Glucose
Shows current or recent glycemic status.

Current

C-Peptide
Shows endogenous insulin-producing function.

Current

Autoantibodies
Show autoimmune risk and disease context.

New Signal

Beta Intercept
Seeks to reveal the active cellular injury occurring within the pancreas — the event the conventional biomarkers do not directly measure.

The Unmet Need

A Direct Molecular View of the Beta Cell

A patient may have evidence of autoimmunity, declining insulin production or worsening glycemic control — but these measurements do not directly quantify the cellular injury occurring within the beta cell.

A complementary molecular biomarker could help researchers study when beta-cell injury is occurring, how it changes over time and how it relates to disease progression and treatment response.

Measuring the Biology Behind the Disease

Kihealth is developing a complementary molecular view of diabetes biology — one focused on what is happening to the beta cell itself.

Through the Beta Intercept program, Kihealth measures circulating differentially unmethylated INS cfDNA, a molecular signal associated with pancreatic beta-cell injury and death.

The objective is to evaluate whether this signal can add biological information beyond measurements of autoimmunity, remaining function and glycemic exposure.

Conventional biomarkers show essential consequences and context. Beta Intercept is being developed to investigate the underlying cellular event. Together, these measurements may provide a more complete view of diabetes biology.

See What Kihealth Measures

The Role of the Beta Cell

The Beta Cell Sits at the Center of Diabetes Progression

Pancreatic beta cells are specialized cells within the islets of Langerhans that produce and secrete insulin in response to changing glucose levels. Their ability to sense glucose and deliver an appropriate insulin response is essential to metabolic regulation.

Type 1 and type 2 diabetes arise through different biological pathways, but both involve progressive disruption of beta-cell health, function or survival.

Medical illustration of the human pancreas with a magnified islet of Langerhans showing beta cells, alpha cells and a capillary

The Common Disease Continuum

  1. 01

    Beta-Cell Stress

    Autoimmune, inflammatory or metabolic pressures place increasing demands on the beta cell and disrupt normal cellular homeostasis.

  2. 02

    Cellular Injury

    Persistent stress may contribute to molecular damage, impaired cellular signaling and loss of normal beta-cell integrity.

  3. 03

    Progressive Dysfunction and Cell Loss

    Beta-cell function may decline through a combination of cellular dysfunction, loss of identity, exhaustion and cell death. The relative contribution of these processes differs across disease type and stage.

  4. 04

    Reduced Insulin Capacity

    As functional beta-cell capacity declines, the pancreas may become less able to produce and secrete sufficient insulin for the body's needs.

  5. 05

    Dysglycemia

    Insufficient or inappropriate insulin responses contribute to abnormal glucose regulation, increasing glycemic variability and persistent hyperglycemia.

  6. 06

    Clinical Disease

    Progressive biological and functional changes ultimately contribute to the clinical presentation and complications of diabetes.

This continuum is conceptual. These biological processes may overlap, occur at different rates and vary substantially between individual patients.

Two Pathways to Beta-Cell Failure

Type 1 Diabetes — Autoimmune Pathway

Immune-Mediated Beta-Cell Destruction

In type 1 diabetes, immune activity is directed against pancreatic islet targets. Autoreactive immune cells contribute to progressive beta-cell injury and destruction, reducing the body's ability to produce insulin.

Conceptual sequence — Type 1 Diabetes

  1. Genetic and Environmental Susceptibility

  2. Islet Autoimmunity

  3. Autoantibody Appearance and Immune Activation

  4. Beta-Cell Injury and Destruction

  5. Declining Endogenous Insulin Production

  6. Clinical Type 1 Diabetes

Islet autoantibodies provide evidence of an immune response directed toward pancreatic islet targets and support T1D risk assessment and staging.

Autoantibodies provide evidence of autoimmunity but do not directly quantify the amount or rate of active beta-cell death.

Type 2 Diabetes — Metabolic Pathway

Metabolic Stress and Progressive Beta-Cell Failure

In type 2 diabetes, insulin resistance increases the demand placed on pancreatic beta cells. Beta cells may initially compensate by increasing insulin production, but persistent metabolic stress can contribute to progressive dysfunction and loss of functional capacity.

Conceptual sequence — Type 2 Diabetes

  1. Insulin Resistance

  2. Compensatory Insulin Demand

  3. Chronic Metabolic Stress

  4. Beta-Cell Dysfunction and Injury

  5. Declining Functional Capacity

  6. Prediabetes and Type 2 Diabetes

Muscle, liver and adipose tissues become less responsive to insulin, increasing the insulin required to maintain glucose regulation.

Type 2 diabetes involves both insulin resistance and beta-cell dysfunction. Beta-cell death is one component of a complex and heterogeneous disease process.

Different Origins. A Shared Loss of Functional Capacity.

T1D and T2D are biologically distinct diseases. In T1D, immune-mediated injury is the principal driver of beta-cell destruction. In T2D, insulin resistance and chronic metabolic stress contribute to progressive beta-cell dysfunction and failure.

Both pathways can ultimately result in insufficient functional beta-cell capacity, impaired insulin availability and dysglycemia.

Type 1 Diabetes

Primary context
Islet autoimmunity
Central beta-cell process
Immune-mediated injury and destruction
Functional consequence
Progressive loss of endogenous insulin production

Type 2 Diabetes

Primary context
Insulin resistance and metabolic dysfunction
Central beta-cell process
Compensatory stress, dysfunction, loss of identity and cell injury
Functional consequence
Insufficient insulin response relative to metabolic demand

Function Shows What Remains. Injury May Reveal What Is Being Lost.

C-peptide helps assess endogenous insulin production, while A1c and glucose measurements provide information about glycemic exposure and control. These measurements are essential, but they do not directly quantify the cellular injury occurring within the beta cell.

A molecular signal associated with beta-cell injury may provide complementary information about the biological process contributing to functional decline.

The Beta Intercept Program

Studying Beta-Cell Injury Across Autoimmune and Metabolic Disease

Kihealth is developing Beta Intercept to measure circulating differentially unmethylated INS cfDNA — a molecular signal associated with pancreatic beta-cell injury and death.

Beta Intercept T1D is evaluating this signal in the context of autoimmunity, disease onset, residual beta-cell function and longitudinal progression.

Beta Intercept T2D is evaluating the signal across insulin resistance, prediabetes, type 2 diabetes and treatment-response research.

The objective is to determine whether direct molecular information about beta-cell injury can complement established measures of autoimmunity, insulin production and glycemic exposure.

The beta cell connects disease biology to clinical progression. In T1D, immune-mediated activity contributes to beta-cell destruction. In T2D, insulin resistance and metabolic stress contribute to beta-cell dysfunction and failure.

Beta Intercept is being developed to study the molecular signal associated with this central biological process.

Explore What Beta Intercept Measures

The Window of Opportunity

Beta-cell death is measurable before HbA1c ever changes.

Traditional biomarkers move only after substantial, irreversible β-cell loss. Kihealth detects the molecular signature of active β-cell death years earlier — the first measurable sign of β-cell stress, inside the window where intervention still preserves function.

Conceptual biomarker trajectories

The earliest signal of β-cell stress

Illustrative — not derived from a single dataset

RELATIVE BIOMARKER SIGNALHIGHMEDLOWWINDOW OF OPPORTUNITYβ-cell death detectable while mass & HbA1c remain stableKihealth Signal — Peak Detection% Demethylated INS cfDNABest Opportunity for Early InterventionHealthyEarly RiskActive β-Cell DeathMetabolic DysfunctionClinical DiabetesDISEASE PROGRESSION
% Demethylated INS cfDNA (Kihealth)
Functional β-Cell Mass
Insulin
C-peptide
HbA1c

Traditional Biomarkers Remain Stable

HbA1c and glucose often stay within the normal range while silent beta-cell injury is already underway.

Kihealth Detects Active Beta-Cell Death

Demethylated INS cfDNA rises as beta cells undergo apoptosis — a direct, earlier molecular signal.

Intervene Before Irreversible Loss

Earlier detection opens the window to preserve functional beta-cell mass before substantial loss has occurred.

Interactive Disease Progression

From the first molecular signal to clinical diagnosis.

Diabetes doesn't begin on the day it's diagnosed. Step through each phase to compare Kihealth's molecular signal against insulin, C-peptide, and traditional glycemic markers.

Phase 02 · Injury~5 years before diagnosis

Active β-Cell Death

Apoptotic β-cells release tissue-specific, demethylated INS cfDNA fragments into circulation. Functional mass is still largely intact and both insulin and C-peptide remain within reference ranges.

Biological Signals

  • ↑ Demethylated INS cfDNA in plasma
  • Autoantibody seroconversion (T1D)
  • Islet inflammation intensifies

Kihealth Signal

Peak detection window — Beta Intercept™ signal is maximal.

Molecular signal precedes clinical diagnosis by years.

Biomarker Status at this Phase

Bar length = relative signal · illustrative

Kihealth molecular signal
Normal range
Trending abnormal
Diagnostic / critically low
Kihealth cfDNAPeak Signal

Active β-cell death at its height — the optimal detection window.

C-peptideNormal

Output still within range despite ongoing injury.

InsulinNormal

Reserve capacity masks underlying loss.

HbA1cNormal

No glycemic abnormality yet detectable.

Fasting GlucoseNormal

Glucose tolerance preserved.

The Biology of Disease Onset

Diabetes does not begin with high blood sugar.

Both Type 1 and Type 2 diabetes begin as a cellular disease of the pancreatic β-cell. Long before fasting glucose or HbA1c cross clinical thresholds, β-cells are exposed to autoimmune attack, metabolic overload, chronic inflammation, and lipotoxicity that impair insulin secretion and eventually trigger apoptosis.

By the time hyperglycemia is measurable, the biological cascade has been active for years — and up to 50% of functional β-cell mass may already be lost. Conventional laboratory markers describe the endpoint of that process, not its onset.

Kihealth Labs was founded to measure the earlier chapters of that story: molecular evidence of active β-cell stress, injury, and death — the biology that precedes clinical disease.

Pancreatic beta cell histology cross-section with insulin granules

The Beta-Cell Progression

From healthy islet to clinical diabetes.

Seven molecular stages define the trajectory from β-cell homeostasis to overt diabetes. Kihealth's diagnostics detect the earliest of these stages — inside the window where intervention still preserves function.

01
Stage 01 — Healthy Beta Cell

Healthy Beta Cell

Islet β-cells maintain glucose homeostasis through tightly regulated, biphasic insulin secretion. Cellular architecture and mitochondrial function are intact.

02
Stage 02 — Metabolic Stress

Metabolic Stress

Chronic hyperglycemia, hyperlipidemia, and increased secretory demand drive endoplasmic reticulum stress and mitochondrial dysfunction within the β-cell.

03
Stage 03 — Inflammation

Inflammation

Islet-resident macrophages release IL-1β and TNF-α; in T1D, autoreactive T cells infiltrate the islet. Local cytokine signaling amplifies β-cell injury.

04
Stage 04 — Apoptosis

Apoptosis

Injured β-cells undergo caspase-mediated programmed cell death, releasing fragmented, tissue-specific DNA into the peripheral circulation.

05
Stage 05 — Loss of Function

Loss of Function

β-cell mass falls and remaining cells de-differentiate. First-phase insulin release is blunted before fasting glucose becomes abnormal.

06
Stage 06 — Prediabetes

Prediabetes

Impaired fasting glucose and impaired glucose tolerance emerge. HbA1c drifts into the 5.7–6.4% range; ~50% of β-cell function may already be lost.

07
Stage 07 — Diabetes

Diabetes

Clinical diagnosis by HbA1c ≥ 6.5%, fasting glucose ≥ 126 mg/dL, or symptomatic hyperglycemia. Microvascular complications have often begun.

Molecular Detection (Kihealth)
Clinical Diagnosis
Intercepting Disease at Stage 02

What We Measure

A Blood-Based Signal Associated With Beta-Cell Injury

Anatomical illustration of the pancreas with a magnified view of a pancreatic islet and its beta cells

When pancreatic beta cells are damaged or destroyed, fragments of their DNA may be released into circulation as cell-free DNA. Because beta cells carry distinctive methylation patterns within specific regions of the insulin gene, these fragments can provide molecular information about their tissue of origin.

Kihealth measures differentially unmethylated INS cfDNA as a blood-based molecular signal associated with pancreatic beta-cell injury and death.

01

Beta-Cell Injury

Autoimmune activity, metabolic stress and disease progression may contribute to beta-cell dysfunction, injury and death.

02

DNA Release Into Circulation

As beta cells are damaged or destroyed, small fragments of their DNA may enter the bloodstream as circulating cell-free DNA.

03

Tissue-Associated Methylation Signal

Specific INS gene regions carry methylation patterns associated with pancreatic beta cells, creating an opportunity to distinguish beta-cell-associated DNA within the broader pool of circulating cfDNA.

Beta-Cell Injury
cfDNA Release
INS Methylation Signal

Methylation Helps Reveal Where DNA Came From

Illustration of a beta-cell cluster releasing cell-free DNA into a blood vessel, surrounded by molecular panels showing immune markers, methylation signals and biomarker trends

DNA methylation is an epigenetic modification that helps regulate gene activity. Although the underlying DNA sequence may be shared across tissues, methylation patterns can differ according to cell type.

Within pancreatic beta cells, selected regions of the INS gene demonstrate characteristic unmethylated patterns. Detecting these patterns within circulating cfDNA can provide evidence consistent with a beta-cell source.

The assay evaluates defined beta-cell-associated methylation regions. It does not assume that all circulating cfDNA originates from the pancreas.

Figure · INS Target Architecture

Chromosome 11 · schematic, not to scale

  • Region
    Upstream promoter
  • INS −233
    Upstream promoter region · Beta-cell-associated methylation target
  • INS −135
    Upstream promoter region · Beta-cell-associated methylation target
  • Transcription start site
    TSS
  • Region
    Downstream coding
  • INS +399
    Downstream coding region · Complementary beta-cell-associated methylation target
  • LMO1
    Analytical reference target · chromosome 11
Unmethylated marker (open)
Methylated marker (filled)
LMO1 analytical reference
INS −233
Location
Upstream promoter region
Role
Beta-cell-associated methylation target
INS −135
Location
Upstream promoter region
Role
Beta-cell-associated methylation target
INS +399
Location
Downstream coding region
Role
Complementary beta-cell-associated methylation target

Three INS Sites. One Integrated Molecular Measurement.

Kihealth evaluates INS −233, INS −135 and INS +399 together rather than relying on a single genomic region.

The multi-site approach is designed to provide a more robust view of the unmethylated INS cfDNA signal and reduce reliance on the behavior of any individual target.

INS −233
INS −135
INS +399
Integrated Unmethylated INS cfDNA Measurement

Analytical Reference

Normalized With LMO1

LMO1 is measured as an intra-chromosomal reference target. It is located on chromosome 11, the same chromosome as INS, and supports normalization across the assay’s multiplex measurement.

LMO1 is used as an analytical reference. It is not interpreted as a biomarker of beta-cell injury.

INS −233INS −135INS +399

compared and normalized with

LMO1 reference

Molecular Output

Average Percentage of Unmethylated INS cfDNA

The resulting measurement represents the average percentage of unmethylated INS cfDNA detected across three evaluated genomic sites.

An increased molecular signal may be consistent with elevated beta-cell injury or turnover. The measurement should be interpreted within its intended use and alongside appropriate clinical and laboratory information.

Measured analyte
Unmethylated INS cfDNA
Genomic targets
INS −233 · INS −135 · INS +399
Reference target
LMO1 (chromosome 11)
Reported as
Average % unmethylated across three sites

A Complementary View of Beta-Cell Biology

The measurement is designed to provide information about a biological process that is different from the processes reflected by conventional diabetes biomarkers.

A1c

Provides information about glycemic exposure.

C-Peptide

Provides information about endogenous insulin secretion and remaining beta-cell function.

Autoantibodies

Provide information about islet autoimmunity and T1D risk or stage.

Unmethylated INS cfDNA

Is being evaluated as a molecular signal associated with beta-cell injury and death.

Together, these measurements may provide a more complete view of disease biology than any individual biomarker alone.

Cell-Free DNA · Methylation

A Molecular Record of Cellular Injury and Death, Carried in Blood

Cells can release small fragments of DNA into circulation during normal turnover, cellular stress, injury and death. These fragments are known as circulating cell-free DNA.

The biological value of cfDNA extends beyond its presence in the blood. Epigenetic patterns carried by each fragment can provide information about the tissue or cell type from which it originated.

Cell-free DNA provides the molecular material.
Methylation provides tissue-associated context.

Scientific illustration of a stressed pancreatic beta cell releasing DNA fragments that enter an adjacent capillary containing red blood cells

How the Signal Is Formed

A stressed cell releases DNA into blood; methylation patterns indicate which tissue the fragment likely came from.

01Cellular stress and release
Illustration of a cluster of cells where one stressed cell releases DNA fragments into the surrounding space

As cells are injured, die or turn over, short DNA fragments are released into the surrounding circulation.

02A mixed pool in plasma
Illustration of a blood vessel containing red blood cells and many differently coloured cell-free DNA fragments carrying filled and open methylation markers

Plasma carries fragments from many tissues at once. Each fragment holds methylation marks at defined genomic sites.

03Tissue-associated signal
Illustration of a mixed pool of DNA fragments with a subset of beta-cell-associated fragments isolated and highlighted

Fragments carrying an unmethylated beta-cell pattern can be distinguished from the broader circulating pool.

Filled marker — methylated siteOpen marker — unmethylated siteBeta-cell-associated fragment

The Molecular Material

Cell-Free DNA Captures a Dynamic Biological Process

Circulating cell-free DNA consists of small DNA fragments found outside cells within blood plasma. These fragments can enter circulation as cells undergo normal turnover, stress, injury or death.

Because cfDNA is collected through a blood sample, it creates an opportunity to study biological processes occurring within tissues that may otherwise be difficult to observe directly.

  • 01Released by Cells

    DNA fragments may enter circulation as cells are injured, die or undergo normal biological turnover.

  • 02Collected From Plasma

    cfDNA can be isolated from the plasma component of a peripheral blood specimen.

  • 03Biologically Informative

    The quantity and molecular characteristics of cfDNA may provide information about active biological processes occurring within the body.

The Tissue Context

Methylation Patterns Help Identify Where DNA Came From

DNA methylation is an epigenetic modification that helps regulate how genes are used without changing the underlying DNA sequence.

Different tissues and cell types can carry distinctive methylation patterns in selected genomic regions. These patterns can function as molecular signatures that help associate circulating DNA fragments with their probable tissue of origin.

  • 01Shared Genetic Sequence

    Most cells contain essentially the same underlying DNA sequence.

  • 02Different Epigenetic Programs

    Cells use different methylation patterns to regulate tissue-specific gene activity.

  • 03Tissue-Associated Signatures

    Selected methylation regions can help distinguish DNA associated with one cell type from the broader mixture of cfDNA in circulation.

The Integrated Scientific Model

From Circulating DNA to Tissue-Associated Insight

  1. 01
    Cellular Stress, Injury or Death
  2. 02
    DNA Fragments Released Into Blood
  3. 03
    cfDNA Isolated From Plasma
  4. 04
    Methylation Pattern Evaluated
  5. 05
    Tissue-Associated Molecular Signal

By combining cfDNA measurement with tissue-associated methylation analysis, researchers can investigate not only whether cellular DNA is present in circulation, but also which biological source may have contributed to the signal.

Why This Matters for the Beta Cell

Making an Inaccessible Organ More Observable

The pancreatic beta cell cannot be sampled routinely without an invasive procedure. Blood-based cfDNA analysis offers a noninvasive way to investigate molecular signals associated with beta-cell injury.

Within beta cells, selected regions of the INS gene carry characteristic unmethylated patterns. Detecting those patterns in circulating cfDNA creates an opportunity to study beta-cell injury through a peripheral blood specimen.

See target-level detail in “What We Measure”

The Scientific Advantage

  • Biological Proximity

    The signal is derived from molecular material released during cellular processes rather than solely from downstream metabolic consequences.

  • Tissue-Associated Context

    Methylation analysis helps connect circulating DNA with a probable cellular source.

  • Longitudinal Potential

    Repeated blood collection may allow researchers to study how the molecular signal changes across disease progression or therapeutic intervention.

A Different Layer of Biological Information

A1c, glucose, C-peptide and autoantibodies remain essential measures of glycemic exposure, metabolic status, endogenous insulin production and autoimmunity.

Cell-free DNA methylation analysis is being developed to provide a different layer of information: a molecular signal associated with tissue-specific cellular injury and death.

Key Takeaway

01Cell-free DNA carries fragments of biological activity through the bloodstream.

02Methylation patterns help reveal the tissue-associated origin of those fragments.

03Together, they create a foundation for studying active disease biology through a blood sample.

The Specimen

One Blood Draw. A Molecular View of Beta-Cell Biology.

Beta Intercept begins with a standard venipuncture blood draw collected in a Norgen Biotek™ cf-DNA/cf-RNA Preservative Tube. The tube is designed to preserve circulating cell-free DNA during specimen transport and processing.

Following controlled centrifugation, plasma is separated from the cellular components of blood. A 500 µL plasma aliquot is then used for cfDNA extraction and molecular analysis.

Collection Device

Norgen Biotek™ cf-DNA/cf-RNA Preservative Tube

Preserves circulating cell-free DNA during specimen transport and processing, limiting background genomic DNA release from blood cells prior to plasma separation.

500 µL PLASMA ALIQUOT
  1. 01
    Venipuncture
    Venipuncture

    Venous whole blood is collected using a standard clinical blood-draw procedure.

  2. 02
    Norgen cfDNA Preservation Tube
    Preservation

    The specimen is collected in a tube designed to stabilize circulating cfDNA and reduce changes that could affect downstream analysis.

  3. 03
    Plasma Separation
    Plasma Separation

    Controlled processing separates plasma from blood cells and cellular debris.

  4. 04
    500 µL PLASMA ALIQUOT
    500 µL Analytical Input

    A defined 500 µL plasma aliquot is used as the input for cfDNA isolation.

  5. 05
    cfDNA Analysis
    Molecular Analysis

    The extracted cfDNA advances into Kihealth’s liquid-biopsy and droplet digital PCR workflow.

From a 500 µL plasma aliquot, Kihealth applies liquid-biopsy science and highly sensitive droplet digital PCR to measure beta-cell-associated INS cfDNA.

Nine-step cfDNA assay workflow: specialized cfDNA preservation blood tube, sample preparation by centrifugation, magnetic bead-based DNA extraction, MagBead-purified cfDNA, methylation-sensitive restriction enzyme digestion with or without MSRE, ddPCR primer probe assay master mix, droplet generation, PCR thermal cycling amplification, droplet digital reader quantification, and confirmatory DNA sequencing.
End-to-end cfDNA assay workflow — collection to droplet digital PCR quantification

Liquid Biopsy

Blood as a diagnostic window into internal organ biology.

Liquid biopsy is the analysis of circulating molecular material — cfDNA, cell-free RNA, proteins, and extracellular vesicles — from a routine blood draw. Pioneered in oncology, it eliminates the anatomical and safety limits of tissue biopsy while providing a systemic view of disease biology.

For metabolic and autoimmune disease, liquid biopsy is uniquely powerful: pancreatic islets are inaccessible for routine sampling, and β-cell biology is otherwise measurable only by proxy. A plasma sample brings that biology into the diagnostic workflow.

Clinical applications
  • Earlier disease detection
  • Longitudinal disease monitoring
  • Therapeutic response tracking
  • Pharmaceutical research
  • Companion diagnostic development
  • Preventative medicine applications
EDTA plasma collection tubes with separated plasma and cellular fraction
Digital droplet PCR instrument processing molecular samples
Cell-free DNA methylation analysis

Digital Droplet PCR

Quantifying rare molecular signal, droplet by droplet.

β-cell–derived cfDNA is exceptionally rare — often less than 0.1% of total plasma cfDNA. Detecting it reliably requires a technology with single-molecule sensitivity. Digital droplet PCR (ddPCR) partitions each reaction into tens of thousands of nanoliter droplets, enabling absolute quantification by Poisson statistics — without a standard curve, and with far greater precision than conventional qPCR.

  1. 1
    Cell-free DNA extraction
    Total cfDNA isolated from EDTA plasma using magnetic-bead chemistry with automated liquid handling.
  2. 2
    Bisulfite conversion
    Unmethylated cytosines are converted to uracil, preserving the methylation fingerprint of the tissue of origin.
  3. 3
    Droplet partitioning
    Each sample is partitioned into ~20,000 nanoliter emulsion droplets, isolating individual DNA molecules.
  4. 4
    Target amplification
    Methylation-specific probes anneal to β-cell–derived loci and are amplified within positive droplets.
  5. 5
    Absolute quantification
    Poisson statistics on positive droplet counts yield an absolute copies-per-mL β-cell cfDNA measurement.

Clinical Development Program — Beta Intercept

Translating Beta-Cell Biology Into a Diagnostic Program

Beta Intercept is Kihealth's clinical-development program evaluating the measurement and interpretation of beta-cell-associated INS cell-free DNA across autoimmune and metabolic disease. The program is designed to investigate active beta-cell injury alongside established clinical measures and build evidence for potential diagnostic and treatment-response applications.

Beta Intercept T1D molecular diagnostic kit box

Beta Intercept T1D

Investigating beta-cell injury across the type 1 diabetes continuum.

  • Pediatric and youth populations
  • Disease onset and progression
  • Autoantibody context
  • Correlation with C-peptide
  • Longitudinal beta-cell injury
  • Beta-cell-preservation studies
Autoimmune Disease Program
Beta Intercept T2D molecular diagnostic kit box

Beta Intercept T2D

Studying beta-cell injury in metabolic dysfunction and type 2 diabetes.

  • Metabolic dysfunction and prediabetes
  • Type 2 diabetes progression
  • Correlation with A1c and C-peptide
  • Insulin-resistance context
  • Longitudinal monitoring
  • Exploratory treatment-response research
Metabolic Disease Program

One Biological Signal. Two Clinical Pathways.

Beta Intercept T1D and Beta Intercept T2D study distinct disease pathways through a shared biological lens: the health, injury and progressive loss of the pancreatic beta cell.

Intercept IQ™ Platform

Turning Molecular Measurement Into Biological Intelligence

Intercept IQ is the platform every Beta Intercept diagnostic is built on. It brings together a true multi-omic foundation — gene sequencing, cfDNA methylation, proteomics, metabolic and biomarker data, preclinical evidence, longitudinal patient history and demographic and clinical context — inside a single analytical environment.

At its center is Ki Intelligence™, Kihealth's AI layer, which integrates those data streams into models and interpretations. Beta Intercept is the clinical-development program that generates evidence around beta-cell-associated INS cfDNA; the platform is what allows that signal — and future diagnostics — to be developed, validated and interpreted in biological context.

Ki Intelligence digital twin AI engine integrating multi-omic biomarkers, epigenetic signatures, cell-free DNA analysis, gene sequencing, proteomics, longitudinal clinical data, predictive disease modeling, and machine learning around a human anatomy model.
1Molecular Signal

Beta Intercept Molecular Result

Beta-cell-associated INS cfDNA measurement evaluated across three genomic sites.

Specimen
Peripheral blood — plasma cfDNA
Target
INS gene promoter region
Genomic sites
3 methylation-sensitive loci
Readout
% unmethylated INS cfDNA
Method
Bisulfite conversion · digital PCR

This measurement is the entry point into the platform — every downstream layer is anchored to it.

2Multi-Omic & Clinical Data Layers
Genomic & Epigenomic
Gene sequencingTargeted panelscfDNA methylationEpigenetic signatures
Protein & Metabolic
ProteomicsMetabolomicsC-peptideInsulin-resistance measures
Clinical & Laboratory
A1cGlucose measuresAutoantibodiesValidated biomarker panels
Preclinical & Contextual
Preclinical model dataLongitudinal patient historyDemographic contextTreatment & outcome records

A true multi-omic approach: molecular, protein, metabolic, preclinical and longitudinal data are combined. Inputs vary by study and clinical setting; not every measure is used for every patient or research question.

3Platform Layer

Intercept IQ™

The integrated analytical environment that unifies multi-omic, preclinical, clinical and longitudinal data into a single research-grade foundation — the foundation every Beta Intercept diagnostic is built on.

Artificial intelligence core
Ki Intelligence™

Kihealth's AI layer inside Intercept IQ — machine-learning methods for multi-omic integration, pattern recognition, risk-model development and longitudinal trajectory analysis.

Multi-omic integrationPattern recognitionRisk modelingTrajectory analysis

Ki Intelligence operates inside Intercept IQ — not as a separate product.

4Research & Analytical Outputs

Integrated Biological Interpretation

Combines molecular and clinical information to support a more complete view of disease biology.

Patient and Research Stratification

Supports the evaluation of biologically relevant subgroups within clinical and research populations.

Longitudinal Trend Analysis

Examines how molecular and clinical measurements change over time.

Risk-Model Development

Supports the research and validation of models designed to characterize emerging or progressive disease risk.

Intercept Score Research

Evaluates approaches for translating multimarker information into an interpretable research score.

Treatment-Response Analysis

Explores molecular and clinical changes associated with therapeutic intervention.

5Diagnostics Built on the Platform

Because the data foundation and analytical core are shared, each new diagnostic inherits the same multi-omic infrastructure, validation methodology and interpretive models rather than starting from zero.

Beta Intercept™ T1D

Beta-cell-associated INS cfDNA for autoimmune beta-cell stress and loss.

Beta Intercept™ T2D

Beta-cell burden combined with metabolic and insulin-resistance context.

Future Intercept programs

The same multi-omic architecture extends to additional tissue- and disease-specific programs.

From Signal to Intelligence

Beta Intercept develops the clinical evidence surrounding the beta-cell molecular signal. Intercept IQ integrates that signal with broader clinical context. Ki Intelligence provides the analytical capabilities used to identify patterns, develop models and generate research insights.

Scientific Validation

Built on decades of peer-reviewed islet science.

Kihealth Labs advances its science through analytical validation, prospective and retrospective clinical studies, academic partnerships, and access to some of the most important longitudinal biobanks in diabetes research.

Kihealth Labs clinical laboratory bench with blood collection tubes and a presentation on clinical validation and academic research partnerships
Yale University technology license
Foundational β-cell methylation IP developed and licensed from Yale School of Medicine.
High-complexity LDT validation
Full analytical validation package covering LoD, linearity, precision, specificity, and clinical concordance.
CLIA / COLA laboratory infrastructure
Kihealth-operated high-complexity clinical laboratory with automated ddPCR workflows.
Nemours pediatric longitudinal T1D study
Multi-year cohort tracking β-cell cfDNA dynamics in at-risk pediatric patients.
DAISY cohort analysis
Retrospective analysis of the Diabetes AutoImmunity Study in the Young biobank.
TEDDY / TrialNet collaboration
Access to prospectively-collected samples from The Environmental Determinants of Diabetes in the Young.
Yale pancreatic transplant research
Reference cohort validating β-cell cfDNA release from graft injury.
ADA scientific presentations
Poster and abstract presentations at the American Diabetes Association Scientific Sessions.
Peer-reviewed publications
Manuscripts, white papers, and preprints spanning three decades of foundational islet science.

Laboratory Infrastructure

Built for High-Complexity Molecular Diagnostics

Kihealth Labs operates the specialized laboratory infrastructure required to translate emerging biomarker science into consistent, reproducible molecular measurements. Our integrated capabilities support the full workflow—from biospecimen processing and assay execution to quality review, data generation and clinical-development research.

Laboratory scientist loading a droplet digital PCR plate while processing plasma specimens
01

Biospecimen Processing

Controlled receipt, accessioning and processing of blood and plasma specimens using defined handling and traceability procedures.

02

Cell-Free DNA Workflows

Specialized extraction, quality assessment and preparation methods designed for low-abundance circulating DNA.

03

Advanced Molecular Analysis

Methylation-sensitive processing and multiplex droplet digital PCR workflows used to evaluate tissue-associated molecular signals.

04

Quality-Controlled Execution

Run-level controls, technical replicates, reference-target normalization and documented acceptance criteria support analytical consistency.

05

Data and Results Integration

Laboratory measurements are reviewed and structured for use in clinical research, analytical validation and the Intercept IQ platform.

Science, Operations and Data—Under One Integrated System

By connecting assay development, laboratory operations, quality systems and analytical infrastructure, Kihealth Labs can investigate complex molecular signals without the fragmentation that often slows diagnostic development.

Assay Development

Design, optimization and analytical evaluation of emerging molecular assays.

Clinical-Study Support

Sample processing and laboratory testing for retrospective, prospective and interventional studies.

Translational Research

Investigation of relationships between molecular measurements, disease biology and established clinical measures.

Scalable Infrastructure

Standardized workflows and data systems designed to support expanding research and development programs.

Quality Embedded Throughout the Workflow

  • Documented laboratory procedures
  • Specimen traceability and chain of custody
  • Controlled instruments and materials
  • Defined quality-control requirements
  • Personnel training and competency
  • Data review and result authorization
  • Continuous performance monitoring
  • Secure laboratory-information management
CLIA-Certified LaboratoryCOLA-Accredited Laboratory

The Laboratory Foundation for Beta Intercept

Kihealth Labs provides the controlled environment, specialized molecular capabilities and quality systems required to advance Beta Intercept from biomarker research through analytical and clinical development.

Kihealth Labs scientist examining specimen tubes under a microscope in the clinical laboratory

Clinical Research Questions

Moving From Measurement to Meaning

A molecular measurement becomes clinically meaningful only when it is evaluated in the context of disease stage, established biomarkers and patient outcomes. The Beta Intercept clinical-development program is designed to investigate how beta-cell-associated INS cfDNA relates to autoimmune activity, metabolic dysfunction, beta-cell function and disease progression over time.

  1. Evaluate whether changes in beta-cell-associated INS cfDNA may provide information about active cellular injury before major declines in insulin-producing capacity become apparent.

  2. Characterize molecular changes before, during and after clinical diagnosis, including periods of rapid beta-cell loss and early disease progression.

  3. Study the relationship between active beta-cell injury and remaining insulin secretory function across different disease stages and populations.

  4. Examine beta-cell-associated INS cfDNA alongside autoantibody number, type and persistence to investigate complementary views of autoimmune risk and active tissue injury.

  5. Evaluate the relationship between beta-cell injury, glycemic exposure and progressive metabolic dysfunction across the type 2 diabetes continuum.

  6. Investigate whether repeated measurements reveal patterns of beta-cell injury that are not visible through a single clinical time point.

  7. Explore whether molecular changes correspond with therapeutic intervention, beta-cell preservation or other clinically relevant measures of treatment response.

Evidence Development

Building Evidence Across the Development Continuum

Kihealth is advancing Beta Intercept through a structured evidence-development pathway—from biological rationale and analytical performance to clinical validation, clinical utility and regulatory development.

  1. Biological Foundation

    Established

    Establish the scientific relationship between beta-cell injury, tissue-associated INS methylation and circulating cell-free DNA.

  2. Analytical Performance

    Completed

    Evaluate the assay's accuracy, precision, analytical sensitivity, analytical specificity, quantitative range, recovery, stability and quality controls.

  3. Reference-Range Development

    Ongoing

    Characterize preliminary measurement distributions and reporting thresholds within an initial reference population.

  4. Clinical Validation

    Ongoing

    Pediatric T1D

    Study beta-cell-associated INS cfDNA in relation to disease onset, autoantibody status, C-peptide and longitudinal beta-cell injury.

    Ongoing

    Adult Metabolic Disease

    Evaluate the molecular signal across metabolic dysfunction, prediabetes and type 2 diabetes in relation to A1c, C-peptide and other metabolic measures.

  5. Independent Confirmation

    Planned

    Confirm analytical and clinical findings in additional cohorts, populations and research settings independent of initial development studies.

  6. Clinical Utility

    Ongoing

    Investigate whether the measurement can provide meaningful information for defined clinical decisions, patient stratification, longitudinal monitoring or treatment-response assessment.

  7. Regulatory Development

    Planned

    Develop the documentation, quality systems and supporting evidence required for clearly defined intended uses and potential regulatory pathways.

A Disciplined Path From Scientific Signal to Clinical Evidence

Each stage addresses a different question: whether the biology is credible, whether the assay performs reliably, whether the signal is associated with relevant clinical characteristics and whether it can ultimately support a defined clinical use.